Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00202 | Not Available | Negative | 219486 - 220217 | 27080.5 |
| transglutaminase-like superfamily protein | SHM7688_00203 | Q49757 | Negative | 220227 - 221024 | 28988.2 |
| hypothetical protein | SHM7688_00204 | Not Available | Negative | 221028 - 221969 | 35396.4 |
| hypothetical protein | SHM7688_00205 | Q55587 | Negative | 221969 - 223393 | 52806.4 |
| biosynthetic arginine decarboxylase | SHM7688_00206 | Q8A2B1 | Positive | 223794 - 225683 | 69598.6 |
| homospermidine synthase | SHM7688_00207 | P0DPE4 | Positive | 225707 - 226918 | 44671.1 |
| carboxynorspermidine/carboxyspermidine decarboxylase | SHM7688_00208 | A8FNH9 | Positive | 226998 - 228167 | 42424.5 |
| agmatinase | SHM7688_00209 | Q72JK8 | Positive | 228164 - 229012 | 30184.9 |
| l-rhamnose operon regulatory protein rhas | SHM7688_00210 | Not Available | Negative | 229025 - 229918 | 32095.8 |
| isoquinoline 1-oxidoreductase subunit alpha | SHM7688_00211 | Not Available | Positive | 230334 - 230798 | 16846.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
