Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00192 | Not Available | Negative | 206492 - 206605 | 3717.17 |
| hypothetical protein | SHM7688_00193 | J8GG30 | Negative | 206842 - 208533 | 63670.2 |
| hypothetical protein | SHM7688_00194 | Not Available | Negative | 208587 - 209651 | 39924.5 |
| competence protein | SHM7688_00195 | Not Available | Positive | 209821 - 210474 | 25020.9 |
| aerobic respiration control sensor protein arcb | SHM7688_00196 | Q9P896 | Positive | 210862 - 212610 | 63945.5 |
| hypothetical protein | SHM7688_00197 | Not Available | Positive | 212656 - 212757 | 3584.14 |
| signal transduction histidine-protein kinase bara | SHM7688_00198 | Not Available | Negative | 212877 - 215345 | 90796.2 |
| undecaprenyl phosphate-aminoarabinose flippase subunit arnf | SHM7688_00199 | Not Available | Negative | 215656 - 216033 | 13273.8 |
| decaprenyl-phosphate phosphoribosyltransferase | SHM7688_00200 | P9WFR4 | Negative | 216030 - 217547 | 55006.1 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | SHM7688_00201 | Not Available | Positive | 217642 - 219336 | 61911.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
