Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_02132 | Not Available | Positive | 2184145 - 2184312 | 6320.55 |
| trbl/virb6 plasmid conjugal transfer protein | SHM7688_02133 | Not Available | Positive | 2184326 - 2185327 | 34735.0 |
| hypothetical protein | SHM7688_02134 | Not Available | Negative | 2185316 - 2185792 | 17169.1 |
| hypothetical protein | SHM7688_02135 | Not Available | Positive | 2186124 - 2187143 | 37606.9 |
| hypothetical protein | SHM7688_02136 | Not Available | Positive | 2187327 - 2187746 | 15180.0 |
| hypothetical protein | SHM7688_02137 | Not Available | Negative | 2188072 - 2188860 | 30180.1 |
| hypothetical protein | SHM7688_02138 | Not Available | Negative | 2188832 - 2189065 | 8949.61 |
| conjugal transfer protein trag | SHM7688_02139 | P09817 | Negative | 2189636 - 2191498 | 69604.1 |
| type iv secretion system t-dna border endonuclease vird2 | SHM7688_02140 | Not Available | Negative | 2191491 - 2193302 | 67664.9 |
| bacterial mobilisation protein (mobc) | SHM7688_02141 | Not Available | Negative | 2193289 - 2193879 | 21895.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
