Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavocytochrome yedz | SHM7688_02112 | A6WYN0 | Positive | 2162877 - 2163500 | 23487.9 |
| methyl-accepting chemotaxis protein 4 | SHM7688_02113 | P55652 | Positive | 2163625 - 2165577 | 69508.8 |
| bacillibactin transport regulator | SHM7688_02114 | Q46855 | Negative | 2165639 - 2166526 | 31912.2 |
| putative oxidoreductase | SHM7688_02115 | Q49WS9 | Positive | 2166760 - 2167491 | 25981.3 |
| hypothetical protein | SHM7688_02116 | Not Available | Negative | 2168139 - 2168696 | 20949.7 |
| endonuclease/exonuclease/phosphatase family protein | SHM7688_02117 | Not Available | Negative | 2168953 - 2169957 | 37702.2 |
| putative atpase | SHM7688_02118 | Not Available | Negative | 2170393 - 2173359 | 110427.0 |
| hypothetical protein | SHM7688_02119 | Not Available | Positive | 2174556 - 2174882 | 11651.0 |
| hypothetical protein | SHM7688_02120 | Not Available | Positive | 2175047 - 2175280 | 8275.36 |
| hypothetical protein | SHM7688_02121 | O64046 | Positive | 2175280 - 2175549 | 9847.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
