Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-2-deoxygluconokinase | SHM7688_02082 | Q55480 | Positive | 2128304 - 2129290 | 34913.4 |
| hth-type transcriptional repressor kstr2 | SHM7688_02083 | Not Available | Negative | 2129369 - 2129965 | 21731.3 |
| glutaryl-coa dehydrogenase | SHM7688_02084 | P95280 | Positive | 2130151 - 2131332 | 43232.4 |
| acyl-coa dehydrogenase | SHM7688_02085 | Not Available | Positive | 2131337 - 2132446 | 38585.3 |
| liv-i protein h | SHM7688_02086 | P21627 | Positive | 2132613 - 2133488 | 30830.9 |
| leucine/isoleucine/valine transporter permease subunit | SHM7688_02087 | Not Available | Positive | 2133493 - 2134578 | 39424.5 |
| sulfate/thiosulfate import atp-binding protein cysa | SHM7688_02088 | Not Available | Positive | 2134575 - 2135345 | 28162.9 |
| liv-i protein f | SHM7688_02089 | Not Available | Positive | 2135345 - 2136118 | 28841.3 |
| long-chain-fatty-acid--coa ligase fadd15 | SHM7688_02090 | Q7TYX8 | Positive | 2136132 - 2138024 | 70396.2 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | SHM7688_02091 | Not Available | Positive | 2138071 - 2139225 | 40395.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
