Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate utilization associated putative membrane protein | SHM7688_02072 | Not Available | Positive | 2115120 - 2116010 | 32063.2 |
| hypothetical protein | SHM7688_02073 | Not Available | Negative | 2115986 - 2116804 | 30939.2 |
| hypothetical protein | SHM7688_02074 | Q5LMR2 | Positive | 2117130 - 2117501 | 14180.5 |
| hypothetical protein | SHM7688_02075 | Q1GK43 | Positive | 2117517 - 2117987 | 17899.5 |
| elongation factor g | SHM7688_02076 | Q5LMR4 | Positive | 2118009 - 2120126 | 77890.8 |
| dna gyrase subunit b | SHM7688_02077 | P0CAX1 | Negative | 2120549 - 2122966 | 89617.8 |
| dna replication and repair protein recf | SHM7688_02078 | Q2KDX0 | Negative | 2123043 - 2124167 | 40824.8 |
| dna polymerase iii subunit beta | SHM7688_02079 | P0CAU5 | Negative | 2124224 - 2125342 | 40469.0 |
| chromosomal replication initiator protein dnaa | SHM7688_02080 | Q1GKT2 | Negative | 2125515 - 2126891 | 51895.2 |
| endonuclease iii | SHM7688_02081 | P0AB84 | Positive | 2127663 - 2128307 | 24051.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
