Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_02062 | Not Available | Negative | 2099597 - 2100244 | 24648.7 |
| hypothetical protein | SHM7688_02063 | Not Available | Positive | 2100426 - 2100659 | 8981.91 |
| aldose 1-epimerase | SHM7688_02064 | Not Available | Negative | 2100695 - 2101567 | 31423.4 |
| 50s ribosomal protein l10 | SHM7688_02065 | Q1GK51 | Positive | 2102044 - 2102562 | 17760.4 |
| 50s ribosomal protein l7/l12 | SHM7688_02066 | Q1GK50 | Positive | 2102634 - 2103014 | 12807.4 |
| hypothetical protein | SHM7688_02067 | Not Available | Positive | 2103246 - 2104562 | 47513.4 |
| hypothetical protein | SHM7688_02068 | Not Available | Negative | 2104648 - 2105094 | 16075.7 |
| hth-type quorum sensing-dependent transcriptional regulator vjbr | SHM7688_02069 | Not Available | Positive | 2105313 - 2106077 | 28789.7 |
| dna-directed rna polymerase subunit beta | SHM7688_02070 | Q5LMQ5 | Positive | 2106518 - 2110654 | 153085.0 |
| dna-directed rna polymerase subunit beta' | SHM7688_02071 | Q1GK48 | Positive | 2110707 - 2114954 | 156918.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
