Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-binding atpase ychf | SHM7688_00172 | P44681 | Negative | 183361 - 184458 | 39538.2 |
| hypothetical protein | SHM7688_00173 | Not Available | Negative | 184729 - 185232 | 17923.7 |
| tryptophan synthase alpha chain | SHM7688_00174 | Q5LV87 | Positive | 185262 - 186053 | 27495.8 |
| trimethylamine:corrinoid methyltransferase | SHM7688_00175 | Not Available | Positive | 186180 - 187793 | 57395.6 |
| aerobic respiration control sensor protein arcb | SHM7688_00176 | Q9HUI3 | Negative | 187897 - 189306 | 50355.6 |
| heme no binding protein | SHM7688_00177 | Not Available | Negative | 189306 - 189851 | 20418.5 |
| l-lactate dehydrogenase | SHM7688_00178 | B0T7X2 | Positive | 189995 - 191161 | 42561.3 |
| hypothetical protein | SHM7688_00179 | Not Available | Positive | 191246 - 191872 | 23197.0 |
| general stress protein ctc | SHM7688_00180 | Q5LV90 | Positive | 191976 - 192602 | 22443.8 |
| arginyl-trna-protein transferase | SHM7688_00181 | Q165K9 | Negative | 192951 - 193772 | 31015.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
