Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit sece | SHM7688_02052 | Not Available | Positive | 2091383 - 2091580 | 7181.12 |
| hypothetical protein | SHM7688_02053 | Q9KV35 | Positive | 2091763 - 2092299 | 20286.3 |
| copper outer membrane regulator | SHM7688_02054 | Not Available | Negative | 2092419 - 2092997 | 20831.9 |
| putative peroxidase-related enzyme | SHM7688_02055 | Not Available | Positive | 2093130 - 2093693 | 20548.2 |
| hypothetical protein | SHM7688_02056 | Not Available | Negative | 2093762 - 2095135 | 49487.1 |
| l-lactate dehydrogenase | SHM7688_02057 | P9WND4 | Positive | 2095364 - 2096512 | 42143.4 |
| d-galactonate transporter | SHM7688_02058 | Q58713 | Positive | 2096623 - 2097435 | 27960.1 |
| multidrug resistance protein | SHM7688_02059 | Not Available | Positive | 2097386 - 2097802 | 14009.4 |
| 50s ribosomal protein l11 | SHM7688_02060 | Q1GK54 | Positive | 2097993 - 2098418 | 14960.3 |
| 50s ribosomal protein l1 | SHM7688_02061 | Q5LMQ0 | Positive | 2098418 - 2099113 | 23672.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
