Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uronate isomerase | SHM7688_02042 | Q98EW1 | Positive | 2082000 - 2083415 | 52155.2 |
| hypothetical protein | SHM7688_02043 | Not Available | Positive | 2083491 - 2084057 | 20068.7 |
| hypothetical protein | SHM7688_02044 | Not Available | Positive | 2084430 - 2084573 | 5480.44 |
| succinate-semialdehyde dehydrogenase | SHM7688_02045 | P0DOV9 | Positive | 2084570 - 2086018 | 50675.7 |
| (s)-sulfolactate dehydrogenase | SHM7688_02046 | Q1QWN6 | Positive | 2086046 - 2086963 | 31928.9 |
| sulfopyruvate decarboxylase, alpha subunit | SHM7688_02047 | Q6M060 | Positive | 2086984 - 2087490 | 18287.4 |
| acetolactate synthase 2 catalytic subunit | SHM7688_02048 | Q6LWM0 | Positive | 2087487 - 2088041 | 19384.3 |
| hemin-binding lipoprotein | SHM7688_02049 | P23847 | Positive | 2088212 - 2089792 | 58181.8 |
| hypothetical protein | SHM7688_02050 | Not Available | Positive | 2090005 - 2090487 | 18725.4 |
| hypothetical protein | SHM7688_02051 | Not Available | Positive | 2090621 - 2091319 | 25455.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
