Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane-bound metallopeptidase | SHM7688_02032 | Not Available | Negative | 2072437 - 2072763 | 12655.0 |
| outer membrane porin f precursor | SHM7688_02033 | Not Available | Negative | 2072760 - 2074745 | 69847.0 |
| 4-hydroxybenzoate octaprenyltransferase | SHM7688_02034 | Q93YP7 | Negative | 2074806 - 2075771 | 35263.2 |
| ribosomal rna small subunit methyltransferase e | SHM7688_02035 | Q8K9E4 | Positive | 2075784 - 2076509 | 26588.1 |
| hypothetical protein | SHM7688_02036 | Not Available | Positive | 2077133 - 2077522 | 14333.2 |
| putative acetyltransferase | SHM7688_02037 | Not Available | Positive | 2077538 - 2078386 | 31102.3 |
| hypothetical protein | SHM7688_02038 | Not Available | Positive | 2078383 - 2078907 | 18435.4 |
| glutamate--cysteine ligase gsha | SHM7688_02039 | Q9ZNX6 | Positive | 2078971 - 2080341 | 50530.3 |
| hypothetical protein | SHM7688_02040 | Not Available | Negative | 2080376 - 2080816 | 16163.5 |
| hypothetical protein | SHM7688_02041 | Not Available | Negative | 2080947 - 2081411 | 17077.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
