Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxorubicin resistance atp-binding protein drra | SHM7688_02022 | P36879 | Positive | 2064027 - 2064950 | 33243.5 |
| inner membrane transport permease yadh | SHM7688_02023 | P0AFN8 | Positive | 2064947 - 2065708 | 27617.6 |
| putative protease sohb | SHM7688_02024 | Q8YFI5 | Positive | 2065809 - 2066606 | 28715.8 |
| inner membrane protein yrbg | SHM7688_02025 | Q0ZAI3 | Positive | 2066785 - 2067756 | 34508.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_02026 | A0A2H3D8Y2 | Positive | 2067774 - 2068553 | 27071.2 |
| hypothetical protein | SHM7688_02027 | Not Available | Positive | 2068605 - 2068697 | 3496.34 |
| excinuclease abc subunit c | SHM7688_02028 | Q5LMC7 | Positive | 2068996 - 2070771 | 65280.3 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | SHM7688_02029 | Q3IYX7 | Positive | 2070865 - 2071524 | 24632.7 |
| sulfur carrier protein moad | SHM7688_02030 | Not Available | Positive | 2071530 - 2071775 | 9151.94 |
| molybdopterin synthase catalytic subunit | SHM7688_02031 | Q53091 | Positive | 2071786 - 2072229 | 16537.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
