Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytanoyl-coa dioxygenase (phyh) | SHM7688_02012 | Not Available | Negative | 2053312 - 2054112 | 30138.3 |
| pca regulon regulatory protein | SHM7688_02013 | Not Available | Negative | 2054178 - 2055002 | 29806.7 |
| fatty acid oxidation complex subunit alpha | SHM7688_02014 | P55100 | Positive | 2055284 - 2057368 | 73072.2 |
| glutaryl-coa dehydrogenase | SHM7688_02015 | Not Available | Positive | 2057373 - 2058560 | 44003.7 |
| acyl-coa dehydrogenase | SHM7688_02016 | I6YCF5 | Positive | 2058564 - 2059634 | 37951.6 |
| putative membrane protein | SHM7688_02017 | Not Available | Negative | 2059717 - 2060172 | 16320.7 |
| lysine-arginine-ornithine-binding periplasmic protein | SHM7688_02018 | Not Available | Positive | 2060502 - 2061266 | 27537.4 |
| 3-ketoacyl-coa thiolase | SHM7688_02019 | O32177 | Negative | 2061344 - 2062546 | 42007.7 |
| putative enoyl-coa hydratase 1 | SHM7688_02020 | P25200 | Negative | 2062626 - 2063075 | 16332.5 |
| hypothetical protein | SHM7688_02021 | Not Available | Positive | 2063338 - 2063865 | 17771.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
