Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglucosamine mutase | SHM7688_01992 | Q1GE79 | Positive | 2037547 - 2038905 | 47722.1 |
| putative dmt superfamily transporter inner membrane protein | SHM7688_01993 | Not Available | Negative | 2038933 - 2039850 | 32160.6 |
| hypothetical protein | SHM7688_01994 | Not Available | Negative | 2039847 - 2040194 | 12123.9 |
| ketol-acid reductoisomerase | SHM7688_01995 | Q5LTP7 | Negative | 2040325 - 2041347 | 37077.7 |
| leucine-responsive regulatory protein | SHM7688_01996 | Q57615 | Positive | 2041479 - 2041934 | 17298.0 |
| leucine-responsive regulatory protein | SHM7688_01997 | Q9V2D7 | Positive | 2041931 - 2042386 | 17037.8 |
| soluble hydrogenase 42 kda subunit | SHM7688_01998 | Not Available | Positive | 2042476 - 2043597 | 40084.0 |
| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase | SHM7688_01999 | Q2RMZ4 | Negative | 2043951 - 2045153 | 43362.6 |
| hypothetical protein | SHM7688_02000 | Not Available | Negative | 2045216 - 2045446 | 7984.74 |
| pyrimidine 5'-nucleotidase | SHM7688_02001 | Not Available | Negative | 2045675 - 2046322 | 24391.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
