Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| his-xaa-ser repeat protein hxsa | SHM7688_01982 | Not Available | Negative | 2023955 - 2025766 | 64975.7 |
| glycine--trna ligase alpha subunit | SHM7688_01983 | A1AZF6 | Positive | 2025921 - 2026850 | 34902.3 |
| methyltransferase, fkbm family | SHM7688_01984 | Not Available | Positive | 2026847 - 2027710 | 32122.7 |
| hypothetical protein | SHM7688_01985 | Not Available | Positive | 2028149 - 2028616 | 17543.6 |
| glutamate permease | SHM7688_01986 | P0AER8 | Positive | 2028623 - 2029834 | 41825.2 |
| glycine--trna ligase beta subunit | SHM7688_01987 | Q1GE74 | Positive | 2029844 - 2032006 | 78623.4 |
| pyruvate, phosphate dikinase | SHM7688_01988 | Q59754 | Positive | 2032063 - 2034642 | 93045.7 |
| spore cortex-lytic enzyme precursor | SHM7688_01989 | Not Available | Positive | 2034790 - 2035434 | 24044.4 |
| bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase | SHM7688_01990 | Not Available | Positive | 2035560 - 2036498 | 34456.3 |
| dihydropteroate synthase | SHM7688_01991 | P0AC14 | Positive | 2036538 - 2037557 | 35895.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
