Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | SHM7688_01972 | P44624 | Positive | 2014053 - 2014724 | 24844.6 |
| yhhn-like protein | SHM7688_01973 | Not Available | Positive | 2015222 - 2015896 | 23990.9 |
| signal recognition particle receptor ftsy | SHM7688_01974 | A9CHH2 | Positive | 2015945 - 2017012 | 37198.6 |
| phosphonate utilization associated putative membrane protein | SHM7688_01975 | Not Available | Positive | 2017092 - 2017994 | 32575.6 |
| intracellular septation protein | SHM7688_01976 | C0RFI0 | Positive | 2018007 - 2018609 | 22806.5 |
| disulfide-bond oxidoreductase yfcg | SHM7688_01977 | P77526 | Negative | 2018620 - 2019315 | 26194.0 |
| hypothetical protein | SHM7688_01978 | Not Available | Positive | 2019565 - 2019735 | 6163.68 |
| o-succinylhomoserine sulfhydrylase | SHM7688_01979 | P9WGB4 | Positive | 2019740 - 2020927 | 42059.0 |
| gtp cyclohydrolase fole2 | SHM7688_01980 | Q1GF96 | Positive | 2021096 - 2022196 | 41012.4 |
| trk system potassium uptake protein trkg | SHM7688_01981 | E1V6K4 | Positive | 2022360 - 2023745 | 49166.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
