Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01962 | Not Available | Negative | 2004897 - 2005253 | 13629.5 |
| putative virion core protein (lumpy skin disease virus) | SHM7688_01963 | Not Available | Negative | 2005384 - 2006547 | 42011.2 |
| hypothetical protein | SHM7688_01964 | Not Available | Negative | 2006572 - 2007486 | 33677.0 |
| tela-like protein | SHM7688_01965 | Q8Y5T8 | Negative | 2007483 - 2008679 | 43549.4 |
| 5-bromo-4-chloroindolyl phosphate hydrolysis protein | SHM7688_01966 | Not Available | Negative | 2008716 - 2009597 | 32165.5 |
| ribosomal large subunit pseudouridine synthase b | SHM7688_01967 | Q9ZD06 | Negative | 2009807 - 2010694 | 33052.0 |
| pp_01948 | SHM7688_01968 | Not Available | Positive | 2010771 - 2011220 | Not Available |
| glutamyl-trna(gln) amidotransferase subunit c | SHM7688_01969 | Q1GFB4 | Positive | 2011420 - 2011707 | 10539.7 |
| glutamyl-trna(gln) amidotransferase subunit a | SHM7688_01970 | Q1GFB5 | Positive | 2011776 - 2013263 | 52619.4 |
| hypothetical protein | SHM7688_01971 | Not Available | Positive | 2013300 - 2014043 | 25327.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
