Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_02915 | Not Available | + | 2966755 - 2966982 | 8192.85 |
| Putative tail tape measure protein | SHM7688_02916 | Not Available | + | 2966975 - 2967631 | 22340.9 |
| Tail protein | SHM7688_02917 | Not Available | + | 2967660 - 2968292 | 23151.2 |
| Minor tail protein | SHM7688_02918 | Not Available | + | 2968292 - 2969188 | 32414.2 |
| Phage cell wall peptidase | SHM7688_02919 | Not Available | + | 2969197 - 2969664 | 17021.6 |
| Tail protein | SHM7688_02920 | Not Available | + | 2969652 - 2973578 | 142365.0 |
| serine acetyltransferase | SHM7688_02921 | P29847 | + | 2973704 - 2974519 | 29331.3 |
| dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | SHM7688_02922 | Q9R9N3 | - | 2974599 - 2975894 | 44866.7 |
| Putative transketolase central region-containing protein | SHM7688_02923 | Q9R9N4 | - | 2975907 - 2977286 | 48768.0 |
| Minor spike protein | SHM7688_03915 | P03646 | + | 3994474 - 3995235 | 27458.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.