Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01952 | Not Available | Negative | 1992292 - 1992477 | 6964.83 |
| histidinol-phosphate aminotransferase 2 | SHM7688_01953 | Q987C8 | Negative | 1992559 - 1993707 | 40846.1 |
| putative enoyl-coa hydratase echa8 | SHM7688_01954 | O35459 | Positive | 1993794 - 1994585 | 28280.5 |
| valine--trna ligase | SHM7688_01955 | Q5LP30 | Negative | 1994647 - 1997835 | 117583.0 |
| regulatory protein asnc | SHM7688_01956 | Q52710 | Negative | 1997983 - 1998420 | 15514.7 |
| lysine/ornithine decarboxylase | SHM7688_01957 | P40808 | Positive | 1998528 - 1999658 | 40184.0 |
| carbon monoxide dehydrogenase large chain | SHM7688_01958 | Q4J6M3 | Positive | 1999735 - 2002032 | 82600.5 |
| hypothetical protein | SHM7688_01959 | P39992 | Positive | 2002133 - 2003086 | 35786.7 |
| putative oxidoreductase | SHM7688_01960 | Not Available | Negative | 2003093 - 2003764 | 24392.9 |
| hypothetical protein | SHM7688_01961 | Not Available | Negative | 2003781 - 2004887 | 40933.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
