Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-formylglutathione hydrolase | SHM7688_01932 | A1AXZ2 | Positive | 1974990 - 1975823 | 30592.9 |
| hypothetical protein | SHM7688_01933 | Q16D98 | Positive | 1975839 - 1976288 | 15825.0 |
| hypothetical protein | SHM7688_01934 | Not Available | Negative | 1976256 - 1976465 | 7244.79 |
| hypothetical protein | SHM7688_01935 | Not Available | Positive | 1976510 - 1976776 | 9599.03 |
| hypothetical protein | SHM7688_01936 | Not Available | Positive | 1976788 - 1977249 | 15842.9 |
| carboxylate/amino acid/amine transporter | SHM7688_01937 | Not Available | Positive | 1977350 - 1978303 | 33947.7 |
| ?-d-glucose-1-phosphatase | SHM7688_01938 | Not Available | Positive | 1978414 - 1979052 | 23921.0 |
| multidrug resistance protein mdth | SHM7688_01939 | Not Available | Negative | 1979049 - 1980302 | 43886.5 |
| afg1-like atpase | SHM7688_01940 | Q3V384 | Positive | 1980450 - 1981523 | 39579.7 |
| putative protein containing caspase domain protein | SHM7688_01941 | Not Available | Negative | 1981581 - 1982309 | 26091.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
