Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptidyl-peptidase 6 | SHM7688_01922 | Not Available | Positive | 1966087 - 1966953 | 30857.9 |
| guanidinobutyrase | SHM7688_01923 | Q9I6K2 | Positive | 1966970 - 1967923 | 34601.3 |
| hypothetical protein | SHM7688_01924 | Not Available | Negative | 1967994 - 1968365 | 14039.4 |
| cytochrome c556 | SHM7688_01925 | Not Available | Positive | 1968830 - 1969264 | 15640.8 |
| peptidase inhibitor i78 family protein | SHM7688_01926 | Not Available | Negative | 1969284 - 1969565 | 9786.86 |
| s-(hydroxymethyl)glutathione dehydrogenase | SHM7688_01927 | P45382 | Positive | 1969709 - 1970848 | 40345.6 |
| hth-type transcriptional regulator rutr | SHM7688_01928 | Not Available | Negative | 1970919 - 1971539 | 23212.2 |
| hypothetical protein | SHM7688_01929 | Not Available | Positive | 1971677 - 1972651 | 35244.9 |
| hxlr-like helix-turn-helix | SHM7688_01930 | Not Available | Negative | 1972648 - 1972998 | 12552.0 |
| auxin efflux carrier | SHM7688_01931 | Not Available | Positive | 1974023 - 1974952 | 32865.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
