Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homogentisate 1,2-dioxygenase | SHM7688_01902 | Q9X4F5 | Positive | 1945071 - 1946426 | 50442.8 |
| ribonuclease bn | SHM7688_01903 | B0R7E2 | Positive | 1946527 - 1947381 | 30660.9 |
| fumarylacetoacetase | SHM7688_01904 | Q1ZXQ1 | Positive | 1947403 - 1948668 | 45767.0 |
| pyrimidine deaminase | SHM7688_01905 | P45862 | Positive | 1948710 - 1949234 | 18882.4 |
| hypothetical protein | SHM7688_01906 | Not Available | Positive | 1949290 - 1949787 | 18383.5 |
| 3-(3-hydroxy-phenyl)propionate/3- hydroxycinnamic acid hydroxylase | SHM7688_01907 | M1WCF5 | Positive | 1949998 - 1951608 | 59437.0 |
| hypothetical protein | SHM7688_01908 | Not Available | Positive | 1951613 - 1951840 | 8006.46 |
| homoprotocatechuate degradation operon regulator, hpar | SHM7688_01909 | P0DPR8 | Negative | 1951825 - 1952190 | 13816.5 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | SHM7688_01910 | Not Available | Positive | 1952525 - 1953697 | 42441.2 |
| arginine transport atp-binding protein artm | SHM7688_01911 | Q5LVC2 | Positive | 1953839 - 1954615 | 28229.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
