Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophanyl-trna synthetase | SHM7688_01882 | O69049 | Positive | 1928665 - 1929000 | 12041.9 |
| hypothetical protein | SHM7688_01883 | Not Available | Negative | 1929067 - 1930170 | 39609.5 |
| lysozyme m1 precursor | SHM7688_01884 | P25310 | Negative | 1930310 - 1931125 | 30869.4 |
| 50s ribosomal protein l19 | SHM7688_01885 | Q5LNE8 | Positive | 1931493 - 1931867 | 13914.8 |
| 50s ribosomal protein l31 | SHM7688_01886 | Q1GDB7 | Positive | 1931879 - 1932100 | 8189.82 |
| 7-cyano-7-deazaguanine synthase | SHM7688_01887 | A1B9Q5 | Positive | 1932278 - 1932982 | 25093.4 |
| 6-carboxy-5,6,7,8-tetrahydropterin synthase | SHM7688_01888 | P65871 | Positive | 1932982 - 1933335 | 13742.1 |
| 7-carboxy-7-deazaguanine synthase | SHM7688_01889 | A9CF16 | Positive | 1933332 - 1934039 | 25538.5 |
| nadph-dependent 7-cyano-7-deazaguanine reductase | SHM7688_01890 | Q1GEZ0 | Positive | 1934081 - 1934545 | 17334.6 |
| poly-beta-hydroxybutyrate polymerase | SHM7688_01891 | O66392 | Negative | 1934578 - 1936344 | 64638.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
