Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p48 | SHM7688_01872 | P0AGD9 | Positive | 1922199 - 1923734 | 54455.4 |
| hypothetical protein | SHM7688_01873 | Not Available | Positive | 1923751 - 1924095 | 12306.6 |
| hypothetical protein | SHM7688_01874 | Not Available | Positive | 1924112 - 1924621 | 18170.6 |
| hypothetical protein | SHM7688_01875 | Not Available | Positive | 1924618 - 1925166 | 20286.0 |
| hypothetical protein | SHM7688_01876 | Not Available | Positive | 1925166 - 1925771 | 22891.1 |
| chorismate mutase | SHM7688_01877 | Not Available | Positive | 1925764 - 1926060 | 11223.3 |
| 30s ribosomal protein s16 | SHM7688_01878 | Q16AN8 | Positive | 1926177 - 1926530 | 13275.0 |
| f420-0--gamma-glutamyl ligase | SHM7688_01879 | Q2RNG5 | Positive | 1926548 - 1927177 | 23498.0 |
| ribosome maturation factor rimm | SHM7688_01880 | Q1GDC5 | Positive | 1927222 - 1927761 | 18911.5 |
| trna (guanine-n(1)-)-methyltransferase | SHM7688_01881 | Q1GDC3 | Positive | 1927761 - 1928567 | 29900.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
