Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-binding protein | SHM7688_01862 | Q1GDE1 | Negative | 1914948 - 1915172 | 7202.95 |
| f-atpase subunit 6 | SHM7688_01863 | A8LKI0 | Negative | 1915261 - 1916019 | 27178.2 |
| atp synthase protein i | SHM7688_01864 | O05329 | Negative | 1916022 - 1916384 | 13228.0 |
| gcv operon activator | SHM7688_01865 | P0A9F8 | Negative | 1916601 - 1917488 | 32443.7 |
| transcriptional repressor sdpr | SHM7688_01866 | Not Available | Positive | 1917860 - 1918207 | 12693.3 |
| hypothetical protein | SHM7688_01867 | Not Available | Negative | 1918134 - 1918673 | 19987.6 |
| carboxylate/amino acid/amine transporter | SHM7688_01868 | Not Available | Negative | 1918831 - 1919748 | 33239.9 |
| d-malate degradation protein r | SHM7688_01869 | Not Available | Negative | 1919745 - 1920629 | 32377.5 |
| fmn-dependent nadh-azoreductase | SHM7688_01870 | Q28UD5 | Positive | 1920755 - 1921300 | 19195.8 |
| prolyl-trna deacylase prox | SHM7688_01871 | A6NEY8 | Negative | 1921391 - 1921933 | 20058.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
