Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hth-type transcriptional regulator ydfh | SHM7688_00152 | Not Available | Negative | 155211 - 155900 | 25473.6 |
| spermidine/putrescine import atp-binding protein pota | SHM7688_00153 | A0RBB0 | Positive | 156122 - 157105 | 35292.7 |
| hypothetical protein | SHM7688_00154 | Not Available | Positive | 157089 - 158408 | 48539.7 |
| putrescine transport system permease protein poth | SHM7688_00155 | P31135 | Positive | 158565 - 159416 | 31719.8 |
| inner membrane abc transporter permease protein ydcv | SHM7688_00156 | P0AFK8 | Positive | 159420 - 160259 | 30660.0 |
| glutamate racemase | SHM7688_00157 | Q6TMG4 | Positive | 160259 - 160906 | 22494.1 |
| sulfite reductase | SHM7688_00158 | O32214 | Negative | 160994 - 162751 | 63439.6 |
| glutamate synthase | SHM7688_00159 | P96218 | Negative | 162758 - 168244 | 197295.0 |
| putative peroxidase-related enzyme | SHM7688_00160 | Not Available | Negative | 168592 - 169161 | 20617.8 |
| lipid a 3-o-deacylase (pagl) | SHM7688_00161 | Not Available | Negative | 169209 - 169694 | 17650.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
