Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dual specificity phosphatase, catalytic domain | SHM7688_01852 | Not Available | Negative | 1906972 - 1907484 | 18199.2 |
| dna polymerase iii subunit tau | SHM7688_01853 | P74876 | Positive | 1907629 - 1909413 | 63883.4 |
| nucleoid-associated protein | SHM7688_01854 | B2JG59 | Positive | 1909612 - 1909956 | 12191.9 |
| recombination protein recr | SHM7688_01855 | Q5LMJ4 | Positive | 1910037 - 1910627 | 20851.0 |
| hypothetical protein | SHM7688_01856 | Not Available | Negative | 1910812 - 1911570 | 27662.4 |
| ankyrin repeat | SHM7688_01857 | Not Available | Positive | 1911724 - 1912566 | 30440.1 |
| ribonuclease i precursor | SHM7688_01858 | Q07465 | Positive | 1912563 - 1913210 | 23904.5 |
| hypothetical protein | SHM7688_01859 | Not Available | Negative | 1913226 - 1913615 | 13886.4 |
| f-type atpase subunit b | SHM7688_01860 | Q1GDE3 | Negative | 1913749 - 1914312 | 19981.1 |
| f-type atpase subunit b' | SHM7688_01861 | Q16AM6 | Negative | 1914318 - 1914860 | 18627.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
