Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-independent coproporphyrinogen-iii oxidase | SHM7688_01842 | Q51676 | Positive | 1894169 - 1895524 | 49961.3 |
| glutathione import atp-binding protein gsia | SHM7688_01843 | P33916 | Negative | 1895539 - 1897119 | 57008.8 |
| inner membrane abc transporter permease protein yeje | SHM7688_01844 | P33915 | Negative | 1897116 - 1898222 | 41110.1 |
| inner membrane abc transporter permease protein yejb | SHM7688_01845 | P0AFU1 | Negative | 1898222 - 1899322 | 40170.7 |
| putative abc transporter-binding protein precursor | SHM7688_01846 | Q577X5 | Negative | 1899330 - 1901267 | 71953.9 |
| trifunctional nucleotide phosphoesterase protein yfkn precursor | SHM7688_01847 | O34313 | Negative | 1901679 - 1903577 | 67927.6 |
| nadh pyrophosphatase | SHM7688_01848 | Q29RH3 | Positive | 1903789 - 1904763 | 35775.9 |
| hypothetical protein | SHM7688_01849 | Not Available | Positive | 1904824 - 1905291 | 17645.4 |
| p-protein | SHM7688_01850 | Q9SA96 | Negative | 1905384 - 1906229 | 31055.2 |
| cytochrome c552 | SHM7688_01851 | P54820 | Positive | 1906373 - 1906900 | 18268.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
