Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-coa:(r)-benzylsuccinate coa-transferase subunit bbse | SHM7688_01822 | O06543 | Positive | 1874129 - 1875223 | 38382.9 |
| uroporphyrinogen decarboxylase | SHM7688_01823 | Q16AR3 | Negative | 1875341 - 1876129 | 28380.6 |
| porphobilinogen deaminase | SHM7688_01824 | A1B853 | Positive | 1876460 - 1877419 | 34101.9 |
| coproporphyrinogen-iii oxidase, aerobic | SHM7688_01825 | Q89SC2 | Negative | 1877477 - 1878370 | 33053.9 |
| general stress protein 39 | SHM7688_01826 | Q9PKF7 | Negative | 1878418 - 1879218 | 28321.7 |
| ribosomal rna small subunit methyltransferase c | SHM7688_01827 | A4SIE3 | Negative | 1879264 - 1880184 | 33421.8 |
| hypothetical protein | SHM7688_01828 | Not Available | Positive | 1880314 - 1880655 | 13368.4 |
| dump phosphatase | SHM7688_01829 | Not Available | Positive | 1880704 - 1881402 | 25683.6 |
| d-alanyl-d-alanine carboxypeptidase dacf precursor | SHM7688_01830 | P08506 | Positive | 1881595 - 1882983 | 49812.0 |
| cytochrome oxidase maturation protein, cbb3-type | SHM7688_01831 | Not Available | Negative | 1883067 - 1883225 | 5828.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
