Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01812 | Not Available | Negative | 1863535 - 1864449 | 33026.1 |
| transcriptional regulatory protein liar | SHM7688_01813 | P29369 | Negative | 1864671 - 1865288 | 21870.6 |
| oxidoreductase molybdopterin binding domain protein | SHM7688_01814 | Not Available | Positive | 1865564 - 1866085 | 19205.8 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_01815 | Not Available | Positive | 1866200 - 1868869 | 98118.4 |
| ben and cat operon transcriptional regulator | SHM7688_01816 | Not Available | Negative | 1868873 - 1869781 | 32774.6 |
| 3-oxoadipyl-coa/3-oxo-5,6-dehydrosuberyl-coa thiolase | SHM7688_01817 | O62742 | Positive | 1869895 - 1871079 | 41415.3 |
| hypothetical protein | SHM7688_01818 | A4FPR5 | Positive | 1871084 - 1871551 | 17043.4 |
| (3r)-hydroxyacyl-acp dehydratase subunit hadb | SHM7688_01819 | Not Available | Positive | 1871564 - 1871989 | 14872.8 |
| acyl-coa dehydrogenase | SHM7688_01820 | P51174 | Positive | 1872021 - 1873169 | 41956.2 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_01821 | P51831 | Positive | 1873181 - 1874020 | 28890.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
