Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01802 | Not Available | Negative | 1853582 - 1854754 | 42117.8 |
| putative protein involved in cation transport | SHM7688_01803 | P39163 | Negative | 1854849 - 1855373 | 19475.0 |
| hypothetical protein | SHM7688_01804 | Not Available | Positive | 1855446 - 1856441 | 36188.2 |
| hypothetical protein | SHM7688_01805 | Not Available | Negative | 1856444 - 1857304 | 30871.4 |
| arogenate dehydrogenase | SHM7688_01806 | Q04983 | Negative | 1857301 - 1858236 | 33321.8 |
| histidinol-phosphate aminotransferase 2 | SHM7688_01807 | Q5LNM6 | Negative | 1858233 - 1859318 | 38767.3 |
| hypothetical protein | SHM7688_01808 | Not Available | Negative | 1859629 - 1859985 | 12244.4 |
| 30s ribosomal protein s4 | SHM7688_01809 | Q1GES7 | Negative | 1860239 - 1860922 | 25847.0 |
| hypothetical protein | SHM7688_01810 | Not Available | Negative | 1861014 - 1862141 | 41168.6 |
| hypothetical protein | SHM7688_01811 | Not Available | Negative | 1862319 - 1863389 | 38439.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
