Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase subunit beta | SHM7688_01792 | Q1GEU8 | Negative | 1839776 - 1841200 | 50479.1 |
| f-atpase gamma subunit | SHM7688_01793 | Q1GEU7 | Negative | 1841217 - 1842089 | 31117.2 |
| atp synthase subunit alpha | SHM7688_01794 | Q5LNN9 | Negative | 1842102 - 1843640 | 54723.4 |
| f-type atpase subunit delta | SHM7688_01795 | Q162S6 | Negative | 1843640 - 1844200 | 19690.9 |
| hypothetical protein | SHM7688_01796 | Not Available | Positive | 1844644 - 1846242 | 54778.4 |
| hypothetical protein | SHM7688_01797 | P05447 | Negative | 1846258 - 1846998 | 27119.0 |
| hydroxyacylglutathione hydrolase | SHM7688_01798 | Q5LNN5 | Positive | 1847060 - 1847827 | 27229.2 |
| atp-dependent clp protease atp-binding subunit clpa | SHM7688_01799 | P05444 | Positive | 1848053 - 1850380 | 84845.5 |
| putative peptidase | SHM7688_01800 | Not Available | Positive | 1850380 - 1851354 | 34492.7 |
| flagellar motor protein motd | SHM7688_01801 | Not Available | Negative | 1851362 - 1853578 | 79287.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
