Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01782 | Not Available | Negative | 1831468 - 1832127 | 23761.7 |
| trab family protein | SHM7688_01783 | Not Available | Positive | 1832223 - 1833224 | 37203.2 |
| putative manganese-dependent inorganic pyrophosphatase | SHM7688_01784 | Q5FK05 | Positive | 1833350 - 1834264 | 32809.1 |
| alpha/beta hydrolase family protein | SHM7688_01785 | Not Available | Negative | 1834373 - 1835272 | 33226.5 |
| transcriptional regulator slya | SHM7688_01786 | Not Available | Negative | 1835269 - 1835736 | 16971.9 |
| l-arabinolactonase | SHM7688_01787 | O34940 | Negative | 1835834 - 1836694 | 31094.5 |
| 2-keto-3-deoxy-galactonokinase | SHM7688_01788 | Not Available | Negative | 1836864 - 1837754 | 31702.0 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | SHM7688_01789 | Q92RN6 | Negative | 1837758 - 1838519 | 27121.5 |
| h-type lectin domain protein | SHM7688_01790 | P05450 | Negative | 1838802 - 1839155 | 13463.9 |
| f-atpase epsilon subunit | SHM7688_01791 | Q1GEU9 | Negative | 1839270 - 1839665 | 14028.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
