Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxylate/amino acid/amine transporter | SHM7688_01772 | P29370 | Negative | 1822654 - 1823520 | 29449.1 |
| hypothetical protein | SHM7688_01773 | Not Available | Negative | 1823685 - 1824251 | 21050.4 |
| putative ribosome biogenesis gtpase rsga | SHM7688_01774 | Q87FP9 | Negative | 1824387 - 1825487 | 40125.6 |
| arylesterase | SHM7688_01775 | Q9A4N3 | Negative | 1825692 - 1826576 | 31593.3 |
| hypothetical protein | SHM7688_01776 | Not Available | Positive | 1827204 - 1827419 | 7835.52 |
| co-chaperonin groes | SHM7688_01777 | A8LJQ0 | Positive | 1827646 - 1827933 | 10080.1 |
| hypothetical protein | SHM7688_01778 | Q1GJ36 | Positive | 1827972 - 1829615 | 57659.3 |
| putative fe-s protein | SHM7688_01779 | Not Available | Positive | 1829808 - 1830002 | 7292.06 |
| adenosine deaminase | SHM7688_01780 | Not Available | Positive | 1830070 - 1830810 | 27557.9 |
| putative enzyme related to lactoylglutathione lyase | SHM7688_01781 | Not Available | Positive | 1830878 - 1831258 | 13528.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
