Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trans-2,3-dihydro-3-hydroxyanthranilate isomerase | SHM7688_01762 | P38765 | Positive | 1814437 - 1815264 | 28807.3 |
| membrane fusogenic activity | SHM7688_01763 | Not Available | Negative | 1815327 - 1815566 | 9043.78 |
| prolipoprotein diacylglyceryl transferase | SHM7688_01764 | Q5LUZ4 | Positive | 1815688 - 1816557 | 31786.6 |
| hypothetical protein | SHM7688_01765 | Q08BY0 | Positive | 1816554 - 1817612 | 38061.7 |
| laccase domain protein yfih | SHM7688_01766 | Q9RT03 | Positive | 1817609 - 1818367 | 26961.8 |
| hypothetical protein | SHM7688_01767 | Not Available | Positive | 1818528 - 1818668 | 5073.34 |
| n5-carboxyaminoimidazole ribonucleotide mutase | SHM7688_01768 | Q9KVT7 | Positive | 1818841 - 1819332 | 16899.4 |
| n5-carboxyaminoimidazole ribonucleotide synthase | SHM7688_01769 | P52559 | Positive | 1819325 - 1820398 | 38364.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | SHM7688_01770 | P16689 | Negative | 1820491 - 1821630 | 39971.9 |
| alpha/beta hydrolase family protein | SHM7688_01771 | Not Available | Negative | 1821623 - 1822639 | 36952.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
