Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative gtp-binding protein engb | SHM7688_01742 | Q1GJX8 | Positive | 1795109 - 1795762 | 23978.0 |
| hypothetical protein | SHM7688_01743 | Not Available | Positive | 1795766 - 1796131 | 13097.9 |
| putative iron-regulated membrane protein | SHM7688_01744 | Not Available | Positive | 1796207 - 1797607 | 49934.8 |
| 3-hydroxyisobutyrate dehydrogenase | SHM7688_01745 | Q9I5I6 | Positive | 1797646 - 1798470 | 29344.3 |
| phosphatidylcholine synthase | SHM7688_01746 | Q98MN3 | Positive | 1798486 - 1799289 | 29817.8 |
| methylated-dna--protein-cysteine methyltransferase, constitutive | SHM7688_01747 | Q8TI34 | Negative | 1799290 - 1799742 | 15755.0 |
| isoleucine--trna ligase | SHM7688_01748 | Q5LNR7 | Negative | 1799854 - 1802814 | 112316.0 |
| hypothetical protein | SHM7688_01749 | Not Available | Negative | 1803119 - 1803316 | 7046.11 |
| group 3 truncated hemoglobin ctb | SHM7688_01750 | Not Available | Positive | 1803627 - 1804034 | 15006.1 |
| hypothetical protein | SHM7688_01751 | Q98M18 | Negative | 1804041 - 1805045 | 35276.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
