Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01722 | Not Available | Positive | 1775979 - 1776194 | 6953.24 |
| hypothetical protein | SHM7688_01723 | Not Available | Positive | 1776271 - 1776486 | 6953.24 |
| hypothetical protein | SHM7688_01724 | Not Available | Positive | 1776573 - 1776776 | 6858.17 |
| flp pilus assembly protein cpab | SHM7688_01725 | Not Available | Positive | 1777045 - 1777914 | 31389.0 |
| hypothetical protein | SHM7688_01726 | Not Available | Negative | 1777783 - 1778043 | 9874.89 |
| pectic enzymes secretion protein outd | SHM7688_01727 | P55702 | Positive | 1778157 - 1779557 | 50146.9 |
| minor outer membrane protein omp16 | SHM7688_01728 | Not Available | Positive | 1779572 - 1780228 | 23523.8 |
| cell division inhibitor mind | SHM7688_01729 | Not Available | Positive | 1780509 - 1781747 | 45320.0 |
| putative conjugal transfer proteinc/mt3759 | SHM7688_01730 | P9WMT2 | Positive | 1781763 - 1783235 | 53974.7 |
| flp pilus assembly protein tadb | SHM7688_01731 | Not Available | Positive | 1783241 - 1784209 | 35637.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
