Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-anti-sigma-b factor | SHM7688_01712 | Not Available | Negative | 1766273 - 1766602 | 11886.2 |
| acetyl-coa acetyltransferase | SHM7688_01713 | Q9I2A8 | Positive | 1766794 - 1767966 | 40652.9 |
| hypothetical protein | SHM7688_01714 | Not Available | Negative | 1768022 - 1768219 | 6852.87 |
| modulator of ftsh protease hflc | SHM7688_01715 | Q9KV08 | Negative | 1768219 - 1769088 | 32136.3 |
| modulator of ftsh protease hflk | SHM7688_01716 | P0ABC8 | Negative | 1769090 - 1770220 | 40306.1 |
| glutathione amide reductase | SHM7688_01717 | P48639 | Negative | 1770302 - 1771657 | 48763.7 |
| ribose-5-phosphate isomerase a | SHM7688_01718 | Q5LTT5 | Negative | 1771672 - 1772460 | 28019.5 |
| disulfide-bond oxidoreductase yfcg | SHM7688_01719 | Not Available | Positive | 1772638 - 1773387 | 27904.5 |
| l-serine dehydratase tdcg | SHM7688_01720 | O86564 | Positive | 1773387 - 1774760 | 47717.9 |
| soluble lytic murein transglycosylase precursor | SHM7688_01721 | Not Available | Negative | 1774795 - 1775631 | 28763.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
