Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01702 | Not Available | Positive | 1758461 - 1759024 | 20503.4 |
| putative periplasmic serine endoprotease degp-like precursor | SHM7688_01703 | P54925 | Negative | 1759167 - 1760630 | 51833.2 |
| hypothetical protein | SHM7688_01704 | Not Available | Negative | 1760854 - 1761357 | 18193.9 |
| hemin uptake protein | SHM7688_01705 | Not Available | Negative | 1761366 - 1761524 | 5791.12 |
| hypothetical protein | SHM7688_01706 | Not Available | Negative | 1761719 - 1762306 | 22359.6 |
| auxin efflux carrier | SHM7688_01707 | O27435 | Negative | 1762381 - 1763262 | 30766.0 |
| heat shock protein hspq | SHM7688_01708 | Not Available | Positive | 1763346 - 1763672 | 12635.5 |
| molybdopterin biosynthesis protein moeb | SHM7688_01709 | Not Available | Negative | 1763718 - 1764104 | 14000.9 |
| putative gamma-glutamyltransferase ywrd | SHM7688_01710 | O05218 | Negative | 1764108 - 1765685 | 55510.4 |
| serine/threonine-protein kinase btrw | SHM7688_01711 | Not Available | Negative | 1765805 - 1766239 | 16078.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
