Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ybhl | SHM7688_01692 | Q9A2A3 | Positive | 1750119 - 1750895 | 27474.0 |
| putative acetyltransferase involved in intracellular survival | SHM7688_01693 | Not Available | Negative | 1750997 - 1751524 | 18876.4 |
| hypothetical protein | SHM7688_01694 | Q5LP83 | Negative | 1751640 - 1751807 | 6380.96 |
| alkane 1-monooxygenase 2 | SHM7688_01695 | Q0VTH3 | Positive | 1752015 - 1753046 | 37404.0 |
| hypothetical protein | SHM7688_01696 | Not Available | Positive | 1753085 - 1753486 | 14801.4 |
| exodeoxyribonuclease 7 large subunit | SHM7688_01697 | Q1GF88 | Negative | 1753490 - 1755028 | 55719.2 |
| phosphoribosylamine--glycine ligase | SHM7688_01698 | Q8G2B1 | Positive | 1755112 - 1756374 | 43910.3 |
| transcriptional regulatory protein uhpa | SHM7688_01699 | Not Available | Positive | 1756453 - 1757064 | 23320.8 |
| hypothetical protein | SHM7688_01700 | Not Available | Negative | 1757136 - 1757867 | 26082.0 |
| ferredoxin vi | SHM7688_01701 | Not Available | Negative | 1757867 - 1758190 | 11663.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
