Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_01682 | Not Available | Negative | 1742747 - 1743643 | 31933.2 |
| hypothetical protein | SHM7688_01683 | Not Available | Negative | 1743683 - 1744132 | 16290.2 |
| Trna-gly | Not Available | Not Available | Positive | 1744196 - 1744270 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1744472 - 1744546 | Not Available |
| 8-oxoguanine deaminase | SHM7688_01686 | Q9I6Z0 | Negative | 1744701 - 1746047 | 47882.3 |
| histidinol-phosphatase | SHM7688_01687 | Not Available | Negative | 1746198 - 1746989 | 27858.9 |
| transcriptional repressor dica | SHM7688_01688 | A6U5H5 | Negative | 1747048 - 1747416 | 13881.5 |
| beta-ketoacyl-acyl-carrier-protein synthase i | SHM7688_01689 | A7RK30 | Positive | 1747746 - 1748708 | 33367.4 |
| hth-type transcriptional regulator gltc | SHM7688_01690 | Q8VWE6 | Negative | 1748701 - 1749594 | 32377.2 |
| hypothetical protein | SHM7688_01691 | Not Available | Positive | 1749754 - 1749963 | 7558.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
