Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| soluble epoxide hydrolase | SHM7688_01662 | Not Available | Negative | 1721072 - 1721884 | 29804.4 |
| long-chain-fatty-acid--coa ligase | SHM7688_01663 | Q00594 | Negative | 1721969 - 1723594 | 58975.8 |
| quercetin 2,3-dioxygenase | SHM7688_01664 | P58112 | Positive | 1723812 - 1724723 | 33512.7 |
| hth-type transcriptional repressor kstr2 | SHM7688_01665 | Not Available | Negative | 1724796 - 1725383 | 21615.1 |
| hypothetical protein | SHM7688_01666 | Not Available | Positive | 1725525 - 1725767 | 8576.36 |
| homoserine dehydrogenase | SHM7688_01667 | P29365 | Positive | 1725864 - 1727162 | 45087.5 |
| fructose-1,6-bisphosphatase class 2 | SHM7688_01668 | Q7U0N5 | Positive | 1727264 - 1728238 | 34619.6 |
| single-stranded-dna-specific exonuclease recj | SHM7688_01669 | P39693 | Positive | 1728330 - 1730078 | 61175.6 |
| Trna-glu | Not Available | Not Available | Positive | 1730271 - 1730345 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 1730390 - 1730464 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
