Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-aminoethylphosphonate--pyruvate transaminase | SHM7688_00132 | Q92UV9 | Negative | 135376 - 136563 | 43091.1 |
| hth-type transcriptional activator cmpr | SHM7688_00133 | Q55459 | Positive | 136680 - 137567 | 32944.6 |
| putrescine transport system permease protein poth | SHM7688_00134 | Q44123 | Negative | 137606 - 139627 | 73691.5 |
| spermidine/putrescine import atp-binding protein pota | SHM7688_00135 | Q92UV5 | Negative | 139627 - 140739 | 40523.7 |
| 2-aminoethylphosphonate abc transporter substrate-binding protein | SHM7688_00136 | P43951 | Negative | 140863 - 141882 | 36539.9 |
| 3-ketoacyl-(acyl-carrier-protein) reductase | SHM7688_00137 | Not Available | Positive | 142185 - 142427 | 8540.87 |
| ureidoglycolate lyase | SHM7688_00138 | Q0B628 | Positive | 142446 - 143291 | 30067.8 |
| hypothetical protein | SHM7688_00139 | Not Available | Positive | 143495 - 144142 | 23072.0 |
| putative abc transporter atp-binding protein/mt1014 | SHM7688_00140 | Q7ULB5 | Positive | 144165 - 144881 | 25689.1 |
| acidobacterial duplicated orphan permease | SHM7688_00141 | Not Available | Positive | 144878 - 146128 | 44939.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
