Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase | SHM7688_01632 | Q1M964 | Positive | 1688521 - 1690038 | 55911.1 |
| hypothetical protein | SHM7688_01633 | Not Available | Positive | 1690592 - 1690894 | 11426.8 |
| acetolactate synthase isozyme 3 large subunit | SHM7688_01634 | O33112 | Negative | 1691077 - 1692735 | 59094.2 |
| hypothetical protein | SHM7688_01635 | Not Available | Positive | 1692846 - 1692989 | 5272.88 |
| putative integral membrane protein | SHM7688_01636 | Not Available | Positive | 1693038 - 1693505 | 17818.2 |
| d-malate degradation protein r | SHM7688_01637 | P30864 | Positive | 1693607 - 1694512 | 32740.4 |
| putative nad(p)h nitroreductase yfko | SHM7688_01638 | Q5HLA1 | Negative | 1694558 - 1695262 | 25991.8 |
| putative multidrug resistance abc transporter atp-binding/permease protein yheh | SHM7688_01639 | P59653 | Negative | 1695793 - 1698795 | 111286.0 |
| hypothetical protein | SHM7688_01640 | Not Available | Positive | 1699052 - 1699456 | 15519.3 |
| (3r)-hydroxyacyl-acp dehydratase subunit hadb | SHM7688_01641 | Not Available | Negative | 1699464 - 1700258 | 28607.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
