Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aerotaxis receptor | SHM7688_01622 | Q9I3F6 | Positive | 1675171 - 1676382 | 44142.8 |
| serine chemoreceptor protein | SHM7688_01623 | Not Available | Positive | 1676447 - 1678528 | 74228.0 |
| chemoreceptor glutamine deamidase ched | SHM7688_01624 | B0T4C1 | Positive | 1678604 - 1679170 | 20579.9 |
| putative galacturonate locus repressor | SHM7688_01625 | Q87QW9 | Positive | 1679637 - 1680635 | 35217.3 |
| cyclic phosphodiesterase-like protein | SHM7688_01626 | Not Available | Negative | 1680632 - 1681168 | 20135.9 |
| inositol-1-monophosphatase | SHM7688_01627 | Q9PAM0 | Positive | 1681388 - 1682203 | 28625.3 |
| putative abc transporter-binding protein precursor | SHM7688_01628 | Not Available | Positive | 1682614 - 1684644 | 74884.0 |
| nickel transport system permease protein nikb | SHM7688_01629 | Not Available | Positive | 1684712 - 1685716 | 37381.0 |
| dipeptide transport system permease protein dppc | SHM7688_01630 | P0AGH6 | Positive | 1685716 - 1686855 | 42097.2 |
| glutathione import atp-binding protein gsia | SHM7688_01631 | Q32IB5 | Positive | 1686852 - 1688516 | 60810.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
