Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydrolase | SHM7688_01612 | Q7MUY1 | Positive | 1667272 - 1668075 | 29603.1 |
| auxin efflux carrier | SHM7688_01613 | Not Available | Positive | 1668106 - 1669035 | 32942.9 |
| dsba-like thioredoxin domain protein | SHM7688_01614 | Not Available | Positive | 1669115 - 1669756 | 23679.9 |
| hypothetical protein | SHM7688_01615 | Not Available | Positive | 1670131 - 1670433 | 10921.9 |
| chemotaxis protein chey | SHM7688_01616 | Q8D0P1 | Positive | 1670430 - 1670795 | 13016.8 |
| chemotaxis protein chea | SHM7688_01617 | Q53135 | Positive | 1670809 - 1673013 | 78290.3 |
| chemotaxis protein chew | SHM7688_01618 | Q60251 | Positive | 1673006 - 1673476 | 17146.8 |
| chemotaxis protein methyltransferase | SHM7688_01619 | Q2KCH9 | Positive | 1673473 - 1674381 | 33780.1 |
| chemotaxis protein chey | SHM7688_01620 | Q2KCH7 | Positive | 1674378 - 1674764 | 13997.2 |
| hypothetical protein | SHM7688_01621 | Not Available | Positive | 1674790 - 1675134 | 12382.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
