Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c551 | SHM7688_01602 | P07625 | Negative | 1659417 - 1659863 | 15294.2 |
| hypothetical protein | SHM7688_01603 | Not Available | Negative | 1660027 - 1660512 | 17362.6 |
| octanoyltransferase | SHM7688_01604 | Q5LTM4 | Negative | 1660669 - 1661337 | 25107.7 |
| Trna-leu | Not Available | Not Available | Positive | 1661543 - 1661629 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 1662325 - 1662414 | Not Available |
| cell division protein ftsn | SHM7688_01607 | Not Available | Positive | 1662624 - 1663499 | 30127.5 |
| d-alanyl-d-alanine carboxypeptidase dacd precursor | SHM7688_01608 | P38422 | Positive | 1663513 - 1664682 | 42244.0 |
| thymidylate kinase | SHM7688_01609 | Q5LPV9 | Positive | 1664679 - 1665317 | 23292.8 |
| dna polymerase iii subunit delta' | SHM7688_01610 | P52024 | Positive | 1665548 - 1666465 | 33322.3 |
| putative deoxyribonuclease ycfh | SHM7688_01611 | P44718 | Positive | 1666469 - 1667275 | 29330.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
