Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bfd-like | SHM7688_01582 | Not Available | Negative | 1636157 - 1636423 | 9719.78 |
| hemin uptake protein | SHM7688_01583 | Not Available | Negative | 1636438 - 1636911 | 18014.1 |
| brucella heme uptake protein a | SHM7688_01584 | Not Available | Negative | 1636997 - 1637509 | 18767.8 |
| peptidase m15 | SHM7688_01585 | P0AB08 | Positive | 1638139 - 1638714 | 21038.3 |
| hypothetical protein | SHM7688_01586 | Not Available | Negative | 1638780 - 1639709 | 33765.0 |
| autoinducer binding domain protein | SHM7688_01587 | Not Available | Negative | 1639831 - 1640631 | 30429.9 |
| alcohol dehydrogenase | SHM7688_01588 | Not Available | Negative | 1641348 - 1642949 | 58520.7 |
| putative enoyl-coa hydratase echa8 | SHM7688_01589 | Q6NVY1 | Negative | 1642954 - 1643961 | 37211.9 |
| putative enoyl-coa hydratase echa8 | SHM7688_01590 | P64017 | Negative | 1643981 - 1644817 | 29629.0 |
| formyl-coenzyme a transferase | SHM7688_01591 | A9X6P9 | Negative | 1644841 - 1646118 | 46330.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
