Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsule polysaccharide biosynthesis protein | SHM7688_01572 | P57037 | Negative | 1623213 - 1625168 | 72070.0 |
| streptogramin a acetyltransferase | SHM7688_01573 | Not Available | Negative | 1625168 - 1625938 | 27708.2 |
| had hydrolase | SHM7688_01574 | Not Available | Negative | 1625948 - 1629214 | 123417.0 |
| 2-dehydro-3-deoxyphosphooctonate aldolase | SHM7688_01575 | A8GUR8 | Negative | 1629229 - 1630050 | 29052.8 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | SHM7688_01576 | Q0AST1 | Negative | 1630047 - 1630832 | 29062.4 |
| arabinose 5-phosphate isomerase kdsd | SHM7688_01577 | O67500 | Negative | 1630840 - 1631802 | 34061.9 |
| polysaccharide export protein wza | SHM7688_01578 | Not Available | Negative | 1631806 - 1632945 | 40314.6 |
| capsule polysaccharide biosynthesis protein | SHM7688_01579 | P42218 | Negative | 1632935 - 1634146 | 44882.9 |
| sulfotransferase family protein | SHM7688_01580 | Not Available | Positive | 1634945 - 1635634 | 26844.2 |
| bacterioferritin | SHM7688_01581 | Q59738 | Negative | 1635697 - 1636182 | 18638.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
