Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucans biosynthesis glucosyltransferase h | SHM7688_01562 | Q0HUS0 | Positive | 1613359 - 1615236 | 69654.1 |
| putative hydrolase | SHM7688_01563 | Not Available | Negative | 1615254 - 1616102 | 30555.2 |
| molybdopterin biosynthesis protein moeb | SHM7688_01564 | Not Available | Negative | 1616099 - 1616563 | 16793.1 |
| yhs domain protein | SHM7688_01565 | Not Available | Negative | 1616573 - 1617085 | 18322.7 |
| nitric oxide dioxygenase | SHM7688_01566 | Q7WHW5 | Negative | 1617205 - 1618824 | 59187.0 |
| maleylpyruvate isomerase | SHM7688_01567 | Q52828 | Negative | 1618900 - 1619520 | 22048.3 |
| d-malate degradation protein r | SHM7688_01568 | Not Available | Positive | 1619638 - 1620537 | 32359.0 |
| polysialic acid transport atp-binding protein kpst | SHM7688_01569 | P23888 | Negative | 1620590 - 1621246 | 24375.8 |
| polysialic acid transport protein kpsm | SHM7688_01570 | P19391 | Negative | 1621243 - 1622013 | 28652.4 |
| vi polysaccharide export inner membrane protein vexd | SHM7688_01571 | P32014 | Negative | 1622032 - 1623216 | 43281.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
